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為建立一種準(zhǔn)確,、快速,、敏感性更高的小反芻獸疫病毒(peste des petits ruminants virus,PPRV)檢測(cè)方法,,建立了一種芯片式數(shù)字PCR(cdPCR)檢測(cè)方法,。根據(jù)GenBank中公布的PPRV Nigeria75 /1疫苗株N基因序列設(shè)計(jì)1對(duì)引物,PCR擴(kuò)增大小為166 bp片段,,構(gòu)建pMDTM18-N標(biāo)準(zhǔn)質(zhì)粒并優(yōu)化反應(yīng)條件,,建立了PPRV N基因cdPCR檢測(cè)方法,并與實(shí)時(shí)熒光定量 PCR(RT-qPCR)檢測(cè)方法的靈敏性,、重復(fù)性,、特異性和臨床樣品檢測(cè)做了比較分析。結(jié)果顯示:當(dāng)質(zhì)粒標(biāo)準(zhǔn)品濃度在1.22×(105~102)copies/μL范圍時(shí),,cdPCR檢測(cè)方法比普通RT-PCR靈敏度高1 000倍,,且穩(wěn)定性好,特異性強(qiáng),;當(dāng)標(biāo)準(zhǔn)品濃度在1.22×(105~10-3)copies/μL范圍時(shí),,cdPCR與RT-qPCR相比具有相同的特異性,,但靈敏性比RT-qPCR高100倍;與RT-qPCR 測(cè)定結(jié)果(13.29±6.74)copies/μL相比,,cdPCR的最低檢測(cè)限更低,,約為(0.44±0.14)copies/μL;cdPCR對(duì)47份臨床樣本的PPRV核酸陽(yáng)性檢出率(25.5%)高于RT-qPCR(17.0%),。結(jié)果表明,,建立的cdPCR方法特異性強(qiáng)、靈敏度高,、重復(fù)性好,,為預(yù)防PPR早期流行提供了一種快速有效的診斷和定量檢測(cè)方法。
Development and Application of a Chip Digital PCR Assay for PPRV
In order to establish an accurate,、rapid and sensitive method to detect peste des petits ruminants virus(PPRV),,a chip digital PCR(cdPCR)assay was developed. A pair of primers was designed based on the N gene sequence of PPRV Nigeria75/1 vaccine strain registered in GenBank. The fragment with the size of 166 bp was amplified by PCR to construct pMDTM18-N standard plasmid,followed by optimization of reaction conditions,,then a cdPCR assay for PPRV N gene was established,,its sensitivity,repeatability,,specificity and clinical sample detection capacity were compared and analyzed with those of RT-qPCR. The results showed that cdPCR was with good stability and specificity,,and its sensitivity was 1 000 times higher than that of RT-PCR when the concentration of plasmid standard ranged 1.22×(105~102)copies/μL;cdPCR was with the same specificity as RT-qPCR,,but its sensitivity was 100 times higher than that of RT-qPCR when the concentration was 1.22×(105~10-3)copies/μL,;the lowest detection limit of cdPCR(0.44±0.14)copies/μL was lower compared to that of RT-qPCR(13.29±6.74)copies/μL;and for 47 clinical samples,,the detection rate of PPRV nucleic acid by cdPCR(25.5%)was higher than that by RT-qPCR(17.0%). In conclusion,,the established cdPCR was with good specificity,sensitivity and repeatability,,which could support to prevent any early prevalence of PPRV as a rapid and effective diagnostic and quantitative method.
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國(guó)家獸藥產(chǎn)業(yè)技術(shù)創(chuàng)新聯(lián)盟 National veterinary drug industry technology innovation alliance |
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